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1. Introduction
2. Basic information
3. Download and general notes
4. Command reference table
5. Basic usage/data formats
6. Data management
7. Summary stats
8. Inclusion thresholds
9. Population stratification
10. IBS/IBD estimation
11. Association
12. Family-based association
13. Permutation procedures
14. Multimarker tests
15. Conditional haplotype tests
16. Proxy association
17. Full imputation (beta)
18. LD-based results clumping
19. Epistasis
20. Copy Number Variation
21. R-plugins
22. SNP annotation lookup
23. Simulation tools
24. Profile scoring
25. Resources
26. Miscellaneous
27. FAQ & Hints
28. gPLINK
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New features / under development
This page lists the features that have just been added to the
development source code (i.e. and are not yet in the stable release).
IMPORTANT Unless you know what you are doing, you are
best to ignore this page and these features until they feature in the
stable release and are documented in the main website.
No new development features: current release up-to-date.
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