PLINK: Whole genome data analysis toolset plink...
Latest PLINK release is v1.03 (10-Jun-2008)

Whole genome association analysis toolset

Introduction | Basics | Download | Reference | Formats | Data management | Summary stats | Filters | Stratification | IBS/IBD | Association | Family-based | Permutation | Haplotypes | Conditional tests | Proxy association | Imputation | Clumping | Epistasis | Copy Number Variation | R-plugins | SNP annotation | Simulation | Profiles | Resources | Misc. | FAQ | gPLINK

1. Introduction

2. Basic information

3. Download and general notes

4. Command reference table

5. Basic usage/data formats 6. Data management

7. Summary stats 8. Inclusion thresholds 9. Population stratification 10. IBS/IBD estimation 11. Association 12. Family-based association 13. Permutation procedures 14. Multimarker tests 15. Conditional haplotype tests 16. Proxy association 17. Full imputation (beta) 18. LD-based results clumping 19. Epistasis 20. Copy Number Variation 21. R-plugins 22. SNP annotation lookup 23. Simulation tools 24. Profile scoring 25. Resources 26. Miscellaneous 27. FAQ & Hints

28. gPLINK
 

New features / under development

This page lists the features that have just been added to the development source code (i.e. and are not yet in the stable release).

IMPORTANT Unless you know what you are doing, you are best to ignore this page and these features until they feature in the stable release and are documented in the main website.

No new development features: current release up-to-date.


 
This document last modified Wednesday, 11-Jun-2008 18:25:10 EDT